TOPological modeling of RNA (TOPRNA)
Description
A CHARMM-based RNA coarse-grained model for exploring the effects that secondary structure connectivity and sterics have on 3D structure
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Publications
Coarse grained models reveal essential contributions of topological constraints to the conformational free energy of RNA bulges, A. Mustoe, H.M. Al-Hashimi and C.L. Brooks III, J. Phys. Chem. B, 2014 Link
Documentation
Funding from the following agencies:
